R: Estimation of Jacquard's Genetic Identity Coefficients

# Estimation of Jacquard's Genetic Identity Coefficients

## Documentation for package ‘Jacquard’ version 1.0.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BoxplotDelta | Boxplots of Jacquard Coefficients
BoxplotTheta | Boxplots of Relateness parameters
CalculateMom | Calculate Moment Estimators for Relatedness Parameters
CalculateTheta | Calculate Relatedness Paramenters from Jacquard Coefficients tA Capitalized Title (ideally limited to 65 characters)
DeltaPair | Extract estimates of Jacquard coefficients for a given pair
DeltaSimulatedPedigree | Estimates of Jacquard Coefficients for Simulated SNP data according to a Pedigree
GTC | Joint Genotype Counts according to a Pedigree
Jacquard.cls | Estimation of Jacquard coefficients by Constrained Least Squares
JointGenotypeCounts | Calculate joint pairwise Genotype Counts
mafvector | Calculate the Minor Allele Frequency (MAF) for a matrix with (0,1,2) genotype data
MakeM | Create matrix of conditional joint genotype probabilities
PairwiseList | Create a Pairwise List of Jacquard Coefficients
SimulatedPedigree | Simulated SNP data according to a Pedigree