* using log directory 'd:/Rcompile/CRANpkg/local/4.7/EBcoBART.Rcheck'
* using R Under development (unstable) (2026-08-10 r90389 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-08-11 07:53:13 UTC
* checking for file 'EBcoBART/DESCRIPTION' ... OK
* this is package 'EBcoBART' version '1.1.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBcoBART' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s] ERROR
Running examples in 'EBcoBART-Ex.R' failed
The error most likely occurred in:

> ### Name: EBcoBART
> ### Title: Learning prior covariate weights for BART models with empirical
> ###   Bayes and co-data.
> ### Aliases: EBcoBART
> 
> ### ** Examples
> 
> ###################################
> ### Binary response example ######
> ###################################
> # For continuous response example, see README.
> # Use data set provided in R package
> # We set EB = T indicating that we also estimate
> # tree structure prior parameter alpha
> # and leaf node prior parameter k
> 
> data("Lymphoma")
> Xtr <- as.matrix(Lymphoma$Xtrain) # Xtr should be matrix object
> Ytr <- Lymphoma$Ytrain
> Xte <- as.matrix(Lymphoma$Xtest) # Xte should be matrix object
> Yte <- Lymphoma$Ytest
> CoDat <- Lymphoma$CoData
> CoDat <- stats::model.matrix(~., CoDat) # encode grouping by dummies
> #(include intercept)
> 
> set.seed(4) # for reproducible results
> Fit <- EBcoBART(Y = Ytr, X = Xtr, CoData = CoDat,
+                 nIter = 2,         # Low! Only for illustration
+                 model = "binary",
+                 EB_k = TRUE, EB_alpha = TRUE,
+                 EB_sigma = FALSE,
+                 verbose = TRUE,
+                 ntree = 5,         # Low! Only for illustration
+                 nchain = 3,
+                 nskip = 500,       # Low! Only for illustration
+                 ndpost = 500,      # Low! Only for illustration
+                 Prob_Init = rep(1/ncol(Xtr), ncol(Xtr)),
+                 k = 2, alpha = .95, beta = 2)
EM iteration  1Error in parse(text = deparse(RNGkind)[-1L]) : 
  <text>:1:22: unexpected ')'
1:     binom.kind = NULL)
                         ^
Calls: EBcoBART ... validObject -> anyStrings -> isTRUE -> validityMethod -> parse
Execution halted
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 1 ERROR