* using log directory 'd:/Rcompile/CRANpkg/local/4.7/kmeRtone.Rcheck'
* using R Under development (unstable) (2026-08-17 r90424 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-08-18 17:59:20 UTC
* checking for file 'kmeRtone/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'kmeRtone' version '1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'kmeRtone' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s] OK
* checking whether the package can be loaded with stated dependencies ... [5s] OK
* checking whether the package can be unloaded cleanly ... [5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s] OK
* checking loading without being on the library search path ... [5s] OK
* checking whether startup messages can be suppressed ... [5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [7s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(kmeRtone)
  > 
  > testthat::test_check("kmeRtone")
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  
  
  ------------------------------------------------------------
                   Extraction of Case K-mers                 
  ------------------------------------------------------------
  Extracting 2-mers from chr20............Saving _problems/test_score-40.R
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_score.R:25:1'): (code run outside of `test_that()`) ────────────
  Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/'
  Backtrace:
       ▆
    1. └─kmeRtone::kmeRtone(...) at test_score.R:25:1
    2.   └─kmeRtone::SCORE(...)
    3.     └─kmeRtone::extractKmers(...)
    4.       └─future.apply::future_lapply(...)
    5.         └─future.apply:::future_xapply(...)
    6.           └─base::tryCatch(...)
    7.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    8.               └─base (local) tryCatchOne(...)
    9.                 └─value[[3L]](cond)
   10.                   └─future.apply:::onError(e, futures = fs, debug = debug)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR