# Rapid Manipulation of the Variant Call Format (VCF)

## Documentation for package ‘vcfppR’ version 0.8.4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

vcfppR-package | vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
plot_variants_per_haplotype | Plot variants on haplotypes across multiple samples
subset.vcftable | Subset a vcftable object
vcfcomp | Compare two VCF/BCF files reporting various statistics
vcfinfo | read a INFO tag in the VCF/BCF into R data structure
vcfplot | Make sensible and beautiful plots based on various objects in vcfppR
vcfpopgen | count the heterozygous sites per sample in the VCF/BCF
vcfppR | vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
vcfpp_calc_info_persite | Calculate INFO score from GP after genotype imputation
vcfreader | API for manipulating the VCF/BCF.
vcfsummary | summarize the various variant types at both variant level and sample level.
vcftable | read VCF/BCF contents into R data structure
vcfwriter | API for writing the VCF/BCF.