* using log directory 'd:/Rcompile/CRANpkg/local/4.5/mlmRev.Rcheck' * using R version 4.5.3 (2026-03-11 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'mlmRev/DESCRIPTION' ... OK * this is package 'mlmRev' version '1.0-9' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mlmRev' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [18s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [93s] ERROR Running 'guImmun.R' [77s] Running 'lmerTest.R' [12s] Running 'versions.R' [3s] Running the tests in 'tests/guImmun.R' failed. Complete output: > library(mlmRev) Loading required package: lme4 Loading required package: Matrix > options(digits=6, useFancyQuotes = FALSE)# signif.stars for once.. > fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd + + husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm), + data = guImmun, family = binomial) Warning message: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : Model failed to converge with max|grad| = 0.415505 (tol = 0.002, component 1) See ?lme4::convergence and ?lme4::troubleshooting. > print(fm, symbolic.cor = TRUE) Generalized linear mixed model fit by maximum likelihood (Laplace Approximation) [glmerMod] Family: binomial ( logit ) Formula: immun ~ kid2p + mom25p + ord + ethn + momEd + husEd + momWork + rural + pcInd81 + (1 | mom) + (1 | comm) Data: guImmun AIC BIC logLik -2*log(L) df.resid 2747.50 2849.69 -1355.75 2711.50 2141 Random effects: Groups Name Std.Dev. mom (Intercept) 1.149 comm (Intercept) 0.726 Number of obs: 2159, groups: mom, 1595; comm, 161 Fixed Effects: (Intercept) kid2pY mom25pY ord23 ord46 ord7p -0.87541 1.26561 -0.12846 -0.14579 0.16272 0.27400 ethnN ethnS momEdP momEdS husEdP husEdS -0.16395 -0.06148 0.28183 0.27883 0.38570 0.35196 husEdU momWorkY ruralY pcInd81 -0.00276 0.25941 -0.67693 -0.85413 optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings > > fm.h <- update(fm, ~ . - husEd) * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [38s] OK * checking PDF version of manual ... [16s] OK * checking HTML version of manual ... [4s] OK * DONE Status: 1 ERROR