* using log directory 'd:/Rcompile/CRANpkg/local/4.5/pprof.Rcheck'
* using R version 4.5.3 (2026-03-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pprof/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pprof' version '1.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pprof' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s] OK
* checking whether the package can be loaded with stated dependencies ... [5s] OK
* checking whether the package can be unloaded cleanly ... [6s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s] OK
* checking whether the namespace can be unloaded cleanly ... [6s] OK
* checking loading without being on the library search path ... [7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [28s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking examples ... [13s] ERROR
Running examples in 'pprof-Ex.R' failed
The error most likely occurred in:

> ### Name: SM_output.logis_cre
> ### Title: Calculate direct/indirect standardized ratios/rates from a
> ###   fitted 'logis_cre' object
> ### Aliases: SM_output.logis_cre
> 
> ### ** Examples
> 
> data(ExampleDataBinary)
> outcome <- ExampleDataBinary$Y
> covar <- ExampleDataBinary$Z
> ProvID <- ExampleDataBinary$ProvID
> data <- data.frame(outcome, ProvID, covar)
> outcome.char <- colnames(data)[1]
> ProvID.char <- colnames(data)[2]
> wb.char <- c("z1", "z2")
> other.char <- c("z3", "z4", "z5")
> fit_cre <- logis_cre(data = data, Y.char = outcome.char, ProvID.char = ProvID.char,
+ wb.char = wb.char, other.char = other.char)
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [13s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(pprof)
  > 
  > test_check("pprof")
  Input format: Y, Z, and ProvID.
  Input format: Y, Z, and ProvID.
  Input format: Y, Z, and ProvID.
  3 out of 100 remaining providers with no events.
  0 out of 100 remaining providers with all events.
  After screening, 38.77% of all records exhibit occurrences of events (Y = 1)
  Implementing SerBIN algorithm (Rcpp) for fixed provider effects model ...
  Iter 1: Minimum criterion across all checks is 5.022e-01;
  Iter 2: Minimum criterion across all checks is 1.422e-01;
  Iter 3: Minimum criterion across all checks is 3.528e-02;
  Iter 4: Minimum criterion across all checks is 5.671e-03;
  Iter 5: Minimum criterion across all checks is 1.214e-03;
  Iter 6: Minimum criterion across all checks is 2.151e-04;
  Iter 7: Minimum criterion across all checks is 6.647e-05;
  Iter 8: Minimum criterion across all checks is 7.565e-06;
  serBIN (Rcpp) algorithm converged after 8 iterations!
  Setting levels: control = 0, case = 1
  Setting direction: controls < cases
  Input format: Y, Z, and ProvID.
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [9s] OK
* DONE
Status: 2 ERRORs