* using log directory 'd:/Rcompile/CRANpkg/local/4.6/CNVScope.Rcheck' * using R version 4.6.1 (2026-06-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-08-12 07:33:04 UTC * checking for file 'CNVScope/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CNVScope' version '3.7.6' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CNVScope' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [14s] OK * checking whether the package can be loaded with stated dependencies ... [13s] OK * checking whether the package can be unloaded cleanly ... [12s] OK * checking whether the namespace can be loaded with stated dependencies ... [13s] OK * checking whether the namespace can be unloaded cleanly ... [13s] OK * checking loading without being on the library search path ... [12s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [34s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [55s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [65s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [6s] OK * DONE Status: OK Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: 616 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:KAZN TMEM51 C1orf195 FHAD1 EFHD2 CTRC CELA2A CELA2B CASP9 DNAJC16 AGMAT DDI2 RSC1A1\noriginal value:75.8374580334341 617 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:PLEKHM2 SLC25A34 TMEM82 FBLIM1 SPEN ZBTB17 C1orf64 HSPB7 CLCNKA CLCNKB FAM131C EPHA2 ARHGEF19 C1orf134 RSG1 FBXO42 SZRD1 SPATA21 NECAP2 FAM231B NBPF1 FAM231A\noriginal value:78.3716679091679 618 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:FAM231A FAM231C CROCC MFAP2 ATP13A2 SDHB PADI2 PADI1 PADI3 PADI4 AC004824.2 RCC2 ARHGEF10L\noriginal value:91.6574432328212 619 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:ARHGEF10L ACTL8 IGSF21 KLHDC7A PAX7\noriginal value:100.176945964528 620 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:PAX7 TAS1R2 RP13-279N23.2 ALDH4A1 IFFO2 UBR4 EMC1 MRTO4 AKR7A3 AKR7A2 PQLC2 CAPZB MINOS1 MINOS1-NBL1 NBL1 HTR6\noriginal value:104.813898302404 621 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:HTR6 TMCO4 RNF186 OTUD3 PLA2G2E PLA2G2A PLA2G5 PLA2G2D PLA2G2F PLA2G2C UBXN10 VWA5B1 CAMK2N1 MUL1 FAM43B CDA PINK1 DDOST KIF17\noriginal value:113.083480912998 622 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:KIF17 SH2D5 HP1BP3 EIF4G3 ECE1 NBPF3 ALPL RAP1GAP\noriginal value:114.011346606525 623 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:USP48 LDLRAD2 HSPG2 CELA3B CELA3A CDC42 WNT4 ZBTB40 EPHA8 C1QA C1QC C1QB\noriginal value:114.026851962828 624 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:EPHB2 LACTBL1 C1orf234 KDM1A LUZP1 HTR1D HNRNPR ZNF436 C1orf213 TCEA3 ASAP3 E2F2 ID3 MDS2\noriginal value:132.646792881344 625 row_genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\ncol genes:RPL11 TCEB3 PITHD1 LYPLA2 GALE HMGCL FUCA1 CNR2 PNRC2 SRSF10 MYOM3 IL22RA1 IFNLR1 GRHL3 STPG1 NIPAL3 RCAN3 NCMAP SRRM1\noriginal value:75 > file.remove("chr1_chr1_melted.RData") [1] TRUE > > > > ### *