* using log directory 'd:/Rcompile/CRANpkg/local/4.6/GRIN2.Rcheck' * using R version 4.6.1 (2026-06-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-08-12 08:05:18 UTC * checking for file 'GRIN2/DESCRIPTION' ... OK * this is package 'GRIN2' version '2.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GRIN2' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [90s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [45s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [10s] OK * DONE Status: OK Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: Computing p-values for 5 gene(s) on chromosome 8 affected by 131 mutation (data block 75 of 77): Wed Aug 12 10:08:21 2026 Computing p-values for 16 gene(s) on chromosome 9 affected by 389 mutation (data block 76 of 77): Wed Aug 12 10:08:21 2026 Computing p-values for 6 gene(s) on chromosome X affected by 209 mutation (data block 77 of 77): Wed Aug 12 10:08:21 2026 Computing q-values: Wed Aug 12 10:08:21 2026 Computing p-values for number of lesion types affecting genes: Wed Aug 12 10:08:21 2026 Computing q-values for number of lesion types affecting genes: Wed Aug 12 10:08:21 2026 > > # Write results to an Excel file: > tmp_file <- file.path(tempdir(), "GRIN_Results.xlsx") > write.grin.xlsx(grin.results, output.file = tmp_file) > if (file.exists(tmp_file)) file.remove(tmp_file) [1] TRUE > > > > ### *