* using log directory 'd:/Rcompile/CRANpkg/local/4.6/HodgesTools.Rcheck'
* using R version 4.6.1 (2026-06-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-08-12 08:11:06 UTC
* checking for file 'HodgesTools/DESCRIPTION' ... OK
* this is package 'HodgesTools' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HodgesTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [7s] OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: OK

Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
 1 chr1   778800  778819 CTCF_MA0139.1        9.32 -     7837. 20.8 
 2 chr1   778890  778909 CTCF_MA0139.1        7.08 +     7837. 20.8 
 3 chr1   869917  869936 CTCF_MA0139.1       13.2  +     3089. 14.9 
 4 chr1   904767  904786 CTCF_MA0139.1       15.2  +     5123. 15.8 
 5 chr1   976207  976226 CTCF_MA0139.1        6.57 -     1880.  9.81
 6 chr1  1002025 1002044 CTCF_MA0139.1        9.55 -     3506. 14.1 
 7 chr1  1019440 1019459 CTCF_MA0139.1        6.80 +     6379. 12.8 
 8 chr1  1019506 1019525 CTCF_MA0139.1        8.50 -     6379. 12.8 
 9 chr1  1033096 1033115 CTCF_MA0139.1        7.40 +     7414. 20.0 
10 chr1  1059403 1059422 CTCF_MA0139.1        6.74 -     6927. 17.0 
# ℹ 32 more rows
> 
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  5.95 1.74 6.48 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========