* using log directory 'd:/Rcompile/CRANpkg/local/4.6/anocva.Rcheck' * using R version 4.6.1 (2026-06-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-08-12 22:07:33 UTC * checking for file 'anocva/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'anocva' version '0.1.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'anocva' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) anocva.Rd:16: Lost braces; missing escapes or markup? 16 | \item{id}{A list in range {1,2,...,n}, where id[i] identifies the population id for the i-th subject.} | ^ checkRd: (-1) anocva.Rd:20: Lost braces; missing escapes or markup? 20 | \item{r}{The optimal number of clusters. If NULL, then it will be estimated by the slope criterion in the interval {2..20}.} | ^ checkRd: (-1) anocvaStats.Rd:14: Lost braces; missing escapes or markup? 14 | \item{id}{A list in range {1,2,...,n}, where id[i] identifies the population id for i-th subject.} | ^ checkRd: (-1) checkNClust.Rd:5: Lost braces; missing escapes or markup? 5 | \title{If the number of clusters has not been set, estimates it by using Slope criterion in the range {2, 20}.} | ^ checkRd: (-1) checkNClust.Rd:24: Lost braces; missing escapes or markup? 24 | If the number of clusters has not been set, estimates it by using Slope criterion in the range {2, 20}. | ^ checkRd: (-1) checkRange01.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Check for {0,1} Interval Normalization.} | ^ checkRd: (-1) checkRange01.Rd:16: Lost braces; missing escapes or markup? 16 | Verifies if the data is normalized in the range {0,1}. | ^ checkRd: (-1) checkRange01.Rd:13: Lost braces; missing escapes or markup? 13 | The data matrix normalized in the range {0,1}. | ^ checkRd: (-1) nClust.Rd:26: Lost braces; missing escapes or markup? 26 | verified in the range {2,..., maxClust}. | ^ checkRd: (-1) nClustMulti.Rd:26: Lost braces; missing escapes or markup? 26 | verified in the range {2,..., maxClust}. Takes the mean of all samples in order to perform the estimation. | ^ checkRd: (-1) optimalSlope.Rd:6: Lost braces; missing escapes or markup? 6 | The optimal number of clusters will be verified in the range {2,..., maxClust}.} | ^ checkRd: (-1) optimalSlope.Rd:22: Lost braces; missing escapes or markup? 22 | The optimal number of clusters will be verified in the range {2,..., maxClust}. | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [6s] OK * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 1 NOTE Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: + # Get the adjacency matrix of the tree graph + adj = as.matrix(igraph::get.adjacency(treeGraph)) + + # Cluster the tree graph in to four clusters + cluster = spectralClustering(adj, 4) + + # See the result clustering + plot(treeGraph, vertex.size=10, vertex.color = cluster, vertex.label = NA) + } Warning: `get.adjacency()` was deprecated in igraph 2.0.0. ℹ Please use `as_adjacency_matrix()` instead. > > > > > ### *