* using log directory 'd:/Rcompile/CRANpkg/local/4.6/detectRUNS.Rcheck' * using R version 4.6.1 (2026-06-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-08-12 10:51:34 UTC * checking for file 'detectRUNS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'detectRUNS' version '0.9.6' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'detectRUNS' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 14.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... INFO 'LazyData' is specified without a 'data' directory * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [13s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [3s] OK Running 'testthat.R' [3s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [42s] OK * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [9s] OK * DONE Status: OK Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: Group Start_SNP End_SNP chrom nSNP from to 1 Jacobs OAR2_2415898.1 OAR2_2415898.1 2 1 4166902 4166902 2 Jacobs OAR2_58221964.1 OAR2_58845032.1 2 13 54135888 54687816 3 Jacobs s63709.1 OAR2_76435176.1 2 19 70664942 71739429 4 Jacobs OAR2_77896643.1 OAR2_78825486.1 2 16 73109758 73926990 5 Jacobs OAR2_130215973.1 OAR2_131783123.1 2 24 121796989 123573014 6 Jacobs OAR2_227848218.1 s09037.1 2 6 215443702 215641893 7 Jacobs s52064.1 OAR2_229781196.1 2 7 215844761 217457102 8 Jacobs s72964.1 s53910.1 2 18 217719922 219015064 9 Jacobs s50915.1 OAR2_232672067.1 2 2 220083076 220103004 10 Jacobs s07830.1 s41614.1 24 12 16041579 17133716 > > > > > ### *