* using log directory 'd:/Rcompile/CRANpkg/local/4.6/dtangle.Rcheck' * using R version 4.6.1 (2026-06-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-08-12 17:59:19 UTC * checking for file 'dtangle/DESCRIPTION' ... OK * this is package 'dtangle' version '2.0.9' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dtangle' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) dtangle.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle2.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle2.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle2.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle2.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) dtangle2.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle2.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle2.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle2.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dtangle2.Rd:119-121: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) find_markers.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) find_markers.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) find_markers.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) find_markers.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) process_markers.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) process_markers.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) process_markers.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) process_markers.Rd:56: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [1s] OK Running 'testthat.R' [1s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [349s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 1 NOTE Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: X1370967_at 3 9.325040 203 X1392754_at 3 9.299281 548 X1372294_at 3 9.289342 236 X1370135_at 3 9.282107 159 X1377642_at 3 9.277748 303 X1368473_at 3 9.177035 70 X1372439_at 3 9.110043 238 X1371923_at 3 9.075984 229 X1395381_at 3 9.055262 578 X1391791_at 3 9.055119 536 X1375367_at 3 9.044122 273 > > > > ### *