# Functional Data Analysis for Multiplexed Cell Images

## Documentation for package ‘funkycells’ version 1.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

computePseudoROCCurves | Compute Pseudo-ROC Curves
funkyForest | Compute a Modified Random Forest Model
funkyModel | Fit a Modified Random Forest Model with Bounds and Alignment
getCountData | Get Agent Count Data
getKFunction | Get K function
getKsPCAData | Get K Functions and Compute Principal Components
plotPP | Plot Spatial Point Process
plot_K_functions | Compare K Functions Between outcomes
predict_funkyForest | Predict a funkyForest
simulateMeta | Simulate Meta Variables
simulatePP | Simulate a Point Process
TNBC | Triple Negative Breast Cancer Data
TNBC_meta | Triple Negative Breast Cancer Phenotypes
TNBC_pheno | Triple Negative Breast Cancer Phenotypes